465
465
Feb 10, 2021
02/21
by
benmarwick
software
eye 465
favorite 1
comment 0
A Distant Reading of the Day of Archaeology A Distant Reading of the Day of Archaeology Introduction The Day of Archaeology is an event where archaeologists write about their acitivities on a group blog . The event started in 2011 and aims to 'provide a window into the daily lives of archaeologists from all over the world'. Currently there are over 1000 posts on the blog, rather a lot to read in one sitting. Rather than closely read each post, we can do a distant reading to get some insights...
Topics: GitHub, code, software, git
370
370
Feb 4, 2021
02/21
by
zackbatist
software
eye 370
favorite 0
comment 0
A list of open source archaeological software and resources Open Archaeology Software & Resources A list of open source archaeological software and resources See ToDo.md for a list of tools or resources that are in demand, but which currently do not exist or need to be significantly improved. 3d-ceramics : 3d models of archaeological ceramics. by: sfsheath links: [ GitHub ] * tags: [3D modelling] A Mobile Data-Collection Workflow for Archaeologists : A list of tools and resource for data...
Topics: GitHub, code, software, git
52
52
Jul 6, 2021
07/21
by
Arothron
software
eye 52
favorite 0
comment 0
Cross-Sectional Geometry Tool (CSGR) CSGR Cross-Sectional Geometry tool (CSGR extracts and calculates from long bone cross sections (e.g. mesh derived from CT data) cortical thickness maps, and biomechanically pertinent cross-sectional geometric (CSG) properties. Authors Profico Antonio, Damiano Marchi and Paul O'Higgins To restore the repository download the bundle wget https://archive.org/download/github.com-Arothron-CSGR_-_2018-09-12_11-05-11/Arothron-CSGR_-_2018-09-12_11-05-11.bundle and...
Topics: GitHub, code, software, git
47
47
Jul 6, 2021
07/21
by
alexherbig
software
eye 47
favorite 0
comment 0
None MultiVCFAnalyzer Table of Contents Description Citation Usage Example Output FAQs Description MultiVCFAnalyzer is a SNP filtering and SNP alignment generation tool, designed around (but not limited to) low coverage ancient DNA data. MultiVCFanalyzer reads multiple VCF files as produced by GATK UnifiedGenotyper, performs filtering based on a number of criteria, and provides the combined genotype calls in a number of formats that are suitable for follow-up analyses such as phylogenetic...
Topics: GitHub, code, software, git
56
56
Jul 6, 2021
07/21
by
pontussk
software
eye 56
favorite 0
comment 0
Compute postmortem damage patterns and decontaminate ancient genomes PMDtools Compute postmortem damage patterns and decontaminate ancient genomes. Description PMDtools computes ancient DNA damage patterns, and implements a likelihood framework incorporating postmortem damage (PMD), base quality scores and biological polymorphism to identify degraded DNA sequences that are unlikely to originate from modern contamination. Using the model, each sequence is assigned a PMD score, for which positive...
Topics: GitHub, code, software, git
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28
Jul 6, 2021
07/21
by
mpieva
software
eye 28
favorite 0
comment 0
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria mapping-iterative-assembler The basic idea of this program is to align DNA sequencing fragments(shotgun or targeted resequencing) to a reference, then call aconsensus. Then the consensus is used as new reference and the processis repeated until convergence. Since it was originally designed to beused on ancient DNA, it supports a position specific substitutionmatrix, which improves both alignment and...
Topics: GitHub, code, software, git
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40
Jul 6, 2021
07/21
by
ANGSD
software
eye 40
favorite 0
comment 0
Program for analysing NGS data. angsd: Program for analysing NGS data. http://www.popgen.dk/angsd Installation: 1) Using a local folder containing htslib git clone https://github.com/samtools/htslib.git; git clone https://github.com/angsd/angsd.git; cd htslib;make;cd ../angsd;make HTSSRC=../htslib 2) Systemwide installation of htslib git clone https://github.com/angsd/angsd.git; cd angsd;make Notes I've switched over to using htslib for parsing single reads (to allow for CRAM reading, while...
Topics: GitHub, code, software, git
88
88
Jul 6, 2021
07/21
by
ArchoLen
software
eye 88
favorite 0
comment 0
A comprehensive list of literature on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. The-ABM-in-Archaeology-Bibliography A selected yet comprehensive list of literature and resources on Agent Based Models (ABM) in Archaeology. Maintained and created by Iza Romanowska and Lennart Linde. Know a missing resource or found a broken link? Put up a pull request ! Our very subjective list of must-reads Axtell, R. L., Epstein, J. M., Dean, J. S. Et...
Topics: GitHub, code, software, git
29
29
Feb 5, 2021
02/21
by
scikit-beam
software
eye 29
favorite 0
comment 0
Data analysis tools for X-Ray, Neutron and Electron sciences MAILING LIST scikit-beam Documentation Examples scikit-beam-examples repository Powder calibration (still needs tilt correction) 1-time correlation dir Jupyter notebook Differential Phase Contrast dir Jupyter notebook Fast conversion to reciprocal space X-Ray Speckle Visibility Spectroscopy Basic Plotting of X-Ray Fluorescence Elemental Lines Quick start install with conda ```conda install scikit-beam -c nsls2forge ``` install...
Topics: GitHub, code, software, git
277
277
Feb 4, 2021
02/21
by
gavinsimpson
software
eye 277
favorite 0
comment 0
ggplot-based plots for vegan ggvegan; ggplot2-based plots for vegan What is ggvegan? ggvegan is a package for the R statistical software and environment. It aims to implement ggplot -based versions of the plots produced by the vegan package. Initially, ggvegan will provide fortify and autoplot methods for objects created in vegan, with the aim of providing full replacement plots via autoplot . The fortify methods allow the data contained within objects created by vegan to be converted into a...
Topics: GitHub, code, software, git
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43
Jul 6, 2021
07/21
by
bischrob
software
eye 43
favorite 0
comment 0
R Package for sourcing elements elemSource R Package for sourcing elements Warning: Currently in development: Only works with obsidian data calibrated by Bruker software with data formatted with the artifact/source in the first column the 10 elements from the calibration in the next columns, the source (site name or obsidian source) in the next column, andthe type in the next column (can only be 'Source' or 'Artifact). Example Install Two packages must be installed prior to installing...
Topics: GitHub, code, software, git
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29
Feb 4, 2021
02/21
by
lparchaeology
software
eye 29
favorite 0
comment 0
A QGIS plugin for local site grids. ARK Grid ARK Grid is a QGIS Plugin to create and work with local site grids as commonly used in archaeology. A grid wizard allows you to create grids from two known points, or from a known origin and baseline. Interactive tools are provided to convert between local coordinates and map coordinates. ARK Grid is developed as part of ARK, the Archaeological Recording Kit , by L ~ P : Archaeology . To restore the repository download the bundle wget...
Topics: GitHub, code, software, git
78
78
Feb 10, 2021
02/21
by
poseidon-framework
software
eye 78
favorite 0
comment 0
A toolset to work with modular genotype databases poseidon-tools A toolset to work with modular genotype databases formatted using Poseidon. The main executable within this package is called trident . Installation Quickstart Guide for the command line utility Poseidon package repositories Analysing your own dataset outside of the main repository Package creation and manipulation commands : init , forge , update Inspection commands : list , summarise , survey , validate Analysis commands :...
Topics: GitHub, code, software, git
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57
Jul 6, 2021
07/21
by
stschiff
software
eye 57
favorite 0
comment 0
None SequenceTools This repository contains some programs that I use for processing sequencing data. Installation Simple Installation via stack and hackage This installation installs the latest version that is up on hackage : Download stack (https://docs.haskellstack.org/en/stable/README/#how-to-install). Run stack install sequenceTools --resolver nightly . You should now have the executables from this package under ~/.local/bin . Add ~/.local/bin to your PATH, for example by adding to your...
Topics: GitHub, code, software, git
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34
Feb 14, 2021
02/21
by
steko
software
eye 34
favorite 0
comment 0
A Data Package specification for archaeological stratigraphy data following the Harris Matrix convention. Harris Matrix Data Package This repository contains archaeological stratigraphic datasets in CSVformat, following the table schema developed by Thomas S. Dye for the hm Lisp package ,together with a Python command-line tool that can check consistency ofdata with the format. Each dataset contains various tables and a data package descriptor( datapackage.json ) that enables consistency checks...
Topics: Codeberg, code, software, git
29
29
Jul 6, 2021
07/21
by
jlapaijmans
software
eye 29
favorite 0
comment 0
Consensify method for error reduction in ancient DNA pseudohaploidisation Consensify Documentation for Consensify v0.1 The manuscript accompanying this source is available on BioRxiv: https://www.biorxiv.org/content/early/2018/12/18/498915?rss=1 Axel Barlow and Johanna L. A. Paijmans, December 2018 emails: axel.barlow.ab@gmail.com, paijmans.jla@gmail.com Introduction Consensify is a method for generating a consensus pseudohaploid genome sequence with greatly reduced error rates compared to...
Topics: GitHub, code, software, git
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60
Feb 10, 2021
02/21
by
mpeeples2008
software
eye 60
favorite 0
comment 0
A Distant Reading of the Day of Archaeology Brainerd-Robinson-Similarity-Coefficient-and-Sampling-Error-Assessment Script for calculating Brainerd-Robinson coefficients based on tabular count or percent data. This script also estimates the probability that a given difference between two samples is the product of sampling error. Brainerd Robinson Coefficient of Similarity: The Brainerd-Robinson (BR) coefficient is a similarity measure that was developed within archaeology specifically for...
Topics: GitHub, code, software, git
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24
Jul 6, 2021
07/21
by
jgregoriods
software
eye 24
favorite 0
comment 0
Analysis of spatial gradients in radiocarbon dates spDates Analysis of Spatial Gradients in Radiocarbon Dates Jonas Gregorio de Souza jonas.gregorio@gmail.com Tools to perform time-space regressions, an approach often used by archaeologists examining the expansion of cultural phenomena. In essence, one plots the radiocarbon ages of archaeological sites against their distances from a hypothetical origin. If a cultural advance has indeed taken place, the expectation is that radiocarbon dates will...
Topics: GitHub, code, software, git
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35
Jul 6, 2021
07/21
by
RGZM
software
eye 35
favorite 0
comment 0
alligator - Allen Transformer Alligator - Allen Transformer Prerequisites The code is developed using and tested with: maven 3.5.0 Netbeans 8.2 Apache Tomcat 8.0.27.0 JDK 1.8 Java EE 7 Web Maven The alligator web application is build using maven as WAR-file. For details have a look at pom.xml . Download and install maven and run it. Setup Download and install maven . Run git clone https://github.com/RGZM/alligator.git to create a local copy of this repository. Run mvn install to install all...
Topics: GitHub, code, software, git
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35
Jul 6, 2021
07/21
by
tesselle
software
eye 35
favorite 0
comment 0
:hourglass: Analysis of Chronological Patterns from Archaeological Count Data kairos Overview A toolkit for absolute dating and analysis of chronological patterns.This package includes functions for chronological modeling and dating ofarchaeological assemblages from count data. It allows to compute timepoint estimates (e.g. Mean Ceramic Date) and density estimates of theoccupation and duration of an archaeological site. Initial development is in progress. Installation You can install the...
Topics: GitHub, code, software, git
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43
Jul 6, 2021
07/21
by
aksel-blaise
software
eye 43
favorite 0
comment 0
Peer reviewed and indexed articles published on Caddo archaeology since 2000. caddonet Peer reviewed and indexed articles published on Caddo archaeology since 2000. To restore the repository download the bundle wget https://archive.org/download/github.com-aksel-blaise-caddonet_-_2020-04-03_11-10-46/aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle and run: git clone aksel-blaise-caddonet_-_2020-04-03_11-10-46.bundle Source: https://github.com/aksel-blaise/caddonet Uploader: aksel-blaise Upload...
Topics: GitHub, code, software, git
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17
Jul 6, 2021
07/21
by
joeroe
software
eye 17
favorite 0
comment 0
R package for tidy radiocarbon data c14 c14 provides basic classes and functions for radiocarbon data in R.It makes it easier to combine methods from several existing packages(e.g. rcarbon, Bchron, oxcAAR, c14bazAAR, ArchaeoPhases, stratigraphr)together and work with them in a tidy data workflow. It was forked from stratigraphr v0.3.0. Installation You can install the development version of c14 from GitHub: ``` r install.packages("devtools")...
Topics: GitHub, code, software, git
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20
Feb 14, 2021
02/21
by
steko
software
eye 20
favorite 0
comment 0
Shortcodes to describe inclusions in ceramic bodies To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-inclusions_-_2019-10-26_17-03-54/steko-inclusions_-_2019-10-26_17-03-54.bundle and run: git clone steko-inclusions_-_2019-10-26_17-03-54.bundle Source: https://codeberg.org/steko/inclusions Uploader: steko Upload date: 2019-10-26
Topics: Codeberg, code, software, git
16
16
Feb 14, 2021
02/21
by
steko
software
eye 16
favorite 0
comment 0
Scripts to create QR-Code images for storage boxes. Each box has an associated web page describing its content, and the QR-Code serves as a short-link from the physical object to the web page. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-qrcode-storage_-_2020-06-22_14-11-12/steko-qrcode-storage_-_2020-06-22_14-11-12.bundle and run: git clone steko-qrcode-storage_-_2020-06-22_14-11-12.bundle Source: https://codeberg.org/steko/qrcode-storage...
Topics: Codeberg, code, software, git
24
24
Feb 5, 2021
02/21
by
paleolimbot
software
eye 24
favorite 0
comment 0
None paleoxrf The goal of paleoxrf is to simplify reading data from Acadia's paleoenvironmental X-Ray Fluorescence laboratory. Installation You can install paleoxrf from GitHub using the following code: ``` r install.packages("remotes") remotes::install_github("paleolimbot/paleoxrf")``` If all is well, you should be able to load the package: rlibrary(paleoxrf) The examples below use dplyr to manipulate the output of the read functions. rlibrary(dplyr) Reading XRF Data The...
Topics: GitHub, code, software, git
68
68
Feb 4, 2021
02/21
by
zoran-cuckovic
software
eye 68
favorite 0
comment 0
None Senscape Senscape is a toolbox for modelling human perception of topography for QGIS, based on QGIS viewshed module . It is a subclass of QGIS processing framework and can be readily used in custom models or scripts. The plugin is in experimental phase. To install: 1. Search for “Senscape” in QGIS plugin manager (make sure experimental plugins are allowed)2. In Processing menu, under Options, allow Senscape provider For manual instalation see QGIS viewshed module . Files should be...
Topics: GitHub, code, software, git
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31
Jul 6, 2021
07/21
by
rubenmilla
software
eye 31
favorite 0
comment 0
Repository of Crop Origins database and Phylo Food phylogeny Crop Origins is a comprehensive ckecklist of crop species cultivated for food. It includes species-level data on diverse continuous and categorical descriptors of antiquity of cultivation, organ harvested for primary use, growth form, and identities, distribution and climate at sites of origin of crops´ wild progenitors. Phylo Food is a time-calibrated and fully resolved phylogenetic tree of the species in Crop Origins. Downloads:...
Topics: GitHub, code, software, git
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40
Mar 2, 2021
03/21
by
stefanieschneider
software
eye 40
favorite 0
comment 0
An Online Tool for the Comparative Analysis of Museum Databases MAX – Museum Analytics Overview In recent years, large museum databases have been created in the international museum sector that are awaiting meaningful use. They offer a hitherto unknown opportunity for empirical investigation of the history of collections, which can be expected to yield far-reaching results, especially in a comparative perspective. Museum Analytics , MAX , is intended to enable lecturers to import freely...
Topics: GitHub, code, software, git
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32
Feb 5, 2021
02/21
by
ISAAKiel
software
eye 32
favorite 0
comment 0
QGIS plugin to transforms profile control points for fotogrammetric rectification from archaeological excavations. profileAAR A python PluginThe plugin profileAAR transforms profile control points for fotogrammetric rectification of profile images of archaeological excavations How to use profileAAR After installing and opening the plugin there is a "?"-Button in the Plugin. There you will find additional informations. QGIS 3 Install Qgis3 >3.6.0 You will find the Plugin in the...
Topics: GitHub, code, software, git
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26
Jul 6, 2021
07/21
by
nickmckay
software
eye 26
favorite 0
comment 0
Development repository for GeoChronR geoChronR geoChronR What is it? Quantifying age uncertainties is a critical component of paleoscience (paleoclimatology, paleoecology, paleontology). geoChronR is an integrated framework that allows scientists to generate state-of-the-art age models for their records, create time-uncertain ensembles of their data, analyze those ensembles with a number of commonly-used techniques, and visualize their results in an intuitive way. The code is being developed in...
Topics: GitHub, code, software, git
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23
Jul 6, 2021
07/21
by
eehh-stanford
software
eye 23
favorite 0
comment 0
Bayesian tools for reconstructing past demography baydem The R package baydem (for bayESIAN demOGRAPHY) provides tools for reconstructing past and present demography. Installation There are three options for installing and using the package: (1) Install on an existing computer with necessary dependencies(2) Build a Docker image using the Dockerfile(3) Use a Docker image from Docker Hub Option 1: Install on an existing computer with necessary dependencies Details will vary based on the machine...
Topics: GitHub, code, software, git
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17
Jul 6, 2021
07/21
by
lutraconsulting
software
eye 17
favorite 0
comment 0
Survey made easy (Android/iOS/Windows app) Input Platform builds: Other Checks: Input makes surveying of geospatial data easy. You can design your survey project in QGIS with custom forms. Download Click below to download the app on your mobile device: Current Release Beta Release For more information on how to use the app, see Documentation . How to help/contribute? Help with translations, join Input App Transifex Team Write a review of the application on App Store or Android Google Play Test...
Topics: GitHub, code, software, git
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91
Feb 4, 2021
02/21
by
lparchaeology
software
eye 91
favorite 0
comment 0
A tool to convert legacy .LST Harris Matrix files into modern graph formats. harris2graph A tool to convert legacy .LST Harris Matrix files into modern graph formats. harris2graph is a script to help migrate data from the LST file format used by the BASP Harris, Stratify and ArchEd packages into modern graph file formats. The supported output formats are:* Graph Modelling Language (GML)* GraphViz / Dot (GV/DOT)* GraphML* Graph Exchange Language (GXL)* Trivial Graph Format (TGF)* Comma Separated...
Topics: GitHub, code, software, git
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53
Feb 10, 2021
02/21
by
maxibor
software
eye 53
favorite 0
comment 0
Coprolite host Identification A fully reproducible pipeline for COPROlite and paleofeces host IDentification CoproID helps you to identify the "true maker" of Illumina sequenced Coprolites/Paleofaeces by checking the microbiome composition and the endogenous DNA. It combines the analysis of putative host ancient DNA with a machine learning prediction of the feces source based on microbiome taxonomic composition: ( A ) First coproID performs a comparative mapping of all reads agains...
Topics: GitHub, code, software, git
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22
Feb 14, 2021
02/21
by
steko
software
eye 22
favorite 0
comment 0
Fix the Exif.Image.Artist tag based on user input depending from the camera model. Useful if you have a bunch of photographs from different people all mixed up. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-fix-exif-artist_-_2020-03-25_20-46-58/steko-fix-exif-artist_-_2020-03-25_20-46-58.bundle and run: git clone steko-fix-exif-artist_-_2020-03-25_20-46-58.bundle Source: https://codeberg.org/steko/fix-exif-artist Uploader: steko Upload date:...
Topics: Codeberg, code, software, git
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28
Feb 14, 2021
02/21
by
steko
software
eye 28
favorite 0
comment 0
Geometrical 2D analysis of archaeological walls. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-murature_-_2020-06-22_14-12-21/steko-murature_-_2020-06-22_14-12-21.bundle and run: git clone steko-murature_-_2020-06-22_14-12-21.bundle Source: https://codeberg.org/steko/murature Uploader: steko Upload date: 2020-06-22
Topics: Codeberg, code, software, git
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29
Feb 4, 2021
02/21
by
cornelmpop
software
eye 29
favorite 0
comment 0
An R package for processing and analyzing 3D scans of archaeological lithics Lithics3D Lithics3D provides a toolbox for working with 3D scans of archaeological lithicswithin the R environment. The functions included herein are designed towork with clean triangular meshes and existing landmarks. For the time being atleast, mesh generation, pre-processing (e.g. cleaning), and landmarking must bedone with different tools (e.g. Meshlab and Landmark Editor ) The included functions can be divided...
Topics: GitHub, code, software, git
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27
Feb 14, 2021
02/21
by
benmarwick
software
eye 27
favorite 0
comment 0
osl_calibration To restore the repository download the bundle wget https://archive.org/download/gist.github.com-5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04/5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04.bundle and run: git clone 5f996a0f52ba1d92f76968119f941bd8_-_2016-05-10_07-53-04.bundle Source: https://gist.github.com/5f996a0f52ba1d92f76968119f941bd8 Uploader: benmarwick Upload date: 2016-05-10
Topics: Gist, GitHub, code, software, git
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22
Feb 14, 2021
02/21
by
benmarwick
software
eye 22
favorite 0
comment 0
How does wikipedia see archaeology? To restore the repository download the bundle wget https://archive.org/download/gist.github.com-0d5e6526604e755b556f_-_2015-09-22_16-54-45/0d5e6526604e755b556f_-_2015-09-22_16-54-45.bundle and run: git clone 0d5e6526604e755b556f_-_2015-09-22_16-54-45.bundle Source: https://gist.github.com/0d5e6526604e755b556f Uploader: benmarwick Upload date: 2015-09-22
Topics: Gist, GitHub, code, software, git
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58
Feb 5, 2021
02/21
by
aejolene
software
eye 58
favorite 0
comment 0
Proof of concept map for disaster response and archaeology. For Keeping History Above Water conference, 2017 disastermap Demonstration map for disaster response and archaeology. For Keeping History Above Water conference, 2017. This data should not be used for official planning or decision making. Demonstration available at https://aejolene.github.io/disastermap/ Presentation details: Archaeology Disaster Response A demonstration map for Keeping History Above Water Conference, November 1, 2017...
Topics: GitHub, code, software, git
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26
Feb 5, 2021
02/21
by
anatolian
software
eye 26
favorite 0
comment 0
A web app and mapping interface for searching and displaying bibliographic information about Anatolian archaeology Anatolia Bibliography Map of Archaeology The goal of this project is to spatially locate bibliographic resources (published articles, books) regarding the archaeology of Anatolia (modern Turkey). This takes the bibliography of archaeology to the next level by showing not only the topics and authors, but where the archaeological research is being done. Note: This web app was...
Topics: GitHub, code, software, git
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21
Jul 6, 2021
07/21
by
geanes
software
eye 21
favorite 0
comment 0
An R package that provides datasets useful for biological and forensic anthropology. In addition, it includes helper functions for working with dataframes. bioanth An R package that provides datasets useful for biological and forensic anthropology. In addition, it includes helper functions for working with dataframes. This package provides the following datasets: howell : Howells Craniometric Data Set howelltest : Howells Craniometric Test Data Set goldman : Goldman Osteometric Data Set Note:...
Topics: GitHub, code, software, git
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27
Feb 14, 2021
02/21
by
steko
software
eye 27
favorite 0
comment 0
An open source radiocarbon (14C) calibration software. Written in Python A radiocarbon calibration software DOI: https://doi.org/10.5281/zenodo.630455 IOSACal is the open source radiocarbon calibration software of the IOSA project. IOSACal includes: a programming library a web-based application a command-line program IOSACal is written in the Python programming language and it can runnatively on any platform where the Python interpreter is available,including all Linux distributions, MacOS X...
Topics: Codeberg, code, software, git
22
22
Feb 14, 2021
02/21
by
steko
software
eye 22
favorite 0
comment 0
A git mirror of the tridas SVN repository from https://sourceforge.net/projects/tridas/ To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-tridas_-_2020-02-10_16-10-11/steko-tridas_-_2020-02-10_16-10-11.bundle and run: git clone steko-tridas_-_2020-02-10_16-10-11.bundle Source: https://codeberg.org/steko/tridas Uploader: steko Upload date: 2020-02-10
Topics: Codeberg, code, software, git
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26
Feb 4, 2021
02/21
by
CWWhitney
software
eye 26
favorite 0
comment 0
R package for quantitative ethnobotany ethnobotanyR The goal of ethnobotanyR is to provide an easy-to-use platform forethnobotanists to work with quantitative ethnobotany assessments. Itclosely follows Tardio and Pardo-de-Santayana(2008) and Whitney etal. (2018) . Users of ethnobotanyR may find it useful to read the background papersand books on ethnobotany theory. In particular Albuquerque etal. (2019) and Gaoue etal. (2017) offer helpfulguidance to understanding theoretical approaches in...
Topics: GitHub, code, software, git
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16
Feb 5, 2021
02/21
by
tschoonj
software
eye 16
favorite 0
comment 0
A library for X-ray matter interaction cross sections for X-ray fluorescence applications xraylib: a library for interactions of X-rays with matter Welcome to the xraylib Github project page! For all information, consult the official documentation Get in touch using Gitter To restore the repository download the bundle wget https://archive.org/download/github.com-tschoonj-xraylib_-_2021-01-06_18-55-17/tschoonj-xraylib_-_2021-01-06_18-55-17.bundle and run: git clone...
Topics: GitHub, code, software, git
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17
Feb 14, 2021
02/21
by
steko
software
eye 17
favorite 0
comment 0
A set of best practices, how-tos and implementations for publishing pottery drawings on the Web as SVG To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-svg-pottery_-_2020-04-05_22-34-18/steko-svg-pottery_-_2020-04-05_22-34-18.bundle and run: git clone steko-svg-pottery_-_2020-04-05_22-34-18.bundle Source: https://codeberg.org/steko/svg-pottery Uploader: steko Upload date: 2020-04-05
Topics: Codeberg, code, software, git
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Jul 6, 2021
07/21
by
ercrema
software
eye 15
favorite 0
comment 0
An Approximate Bayesian Computation Framework for inferring patterns of cultural transmission from frequency data cTransmission An Approximate Bayesian Computation Framework for inferring patterns of cultural transmission from frequency data To restore the repository download the bundle wget https://archive.org/download/github.com-ercrema-cTransmission_-_2020-05-14_17-43-37/ercrema-cTransmission_-_2020-05-14_17-43-37.bundle and run: git clone ercrema-cTransmission_-_2020-05-14_17-43-37.bundle...
Topics: GitHub, code, software, git
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Jul 6, 2021
07/21
by
parkgayoung
software
eye 29
favorite 0
comment 0
This repository contains our data and R code for our article on computational text analysis of racism in archaeology. Computational text analysis of archaeological writing about race This repository contains the data and code for our paper. Our pre-printis online here: Park, G., L-Y Wang, B. Marwick, (2020) How do archaeologists write about race? Computational text analysis of 41 years of Society of American Archaeology Annual Meeting Abstracts . , Accessed 21 Jun 2021. Online at...
Topics: GitHub, code, software, git
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27
Feb 5, 2021
02/21
by
rekrei
software
eye 27
favorite 0
comment 0
Platform for crowdsourcing the digital recreation of lost heritage Rekrei Platform About Rekrei Rekrei (founded as Project Mosul, we changed our name in late 2015) is a volunteer project that crowdsources the digital reconstruction of lost heritage. The project was founded by Matthew Vincent and Chance Coughenour in March 2015. You can read more about the project on our about page Core Team Rekrei is a community of people who actively contribute towards the preservation of cultural heritage...
Topics: GitHub, code, software, git
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20
Feb 4, 2021
02/21
by
sfsheath
software
eye 20
favorite 0
comment 0
None To restore the repository download the bundle wget https://archive.org/download/github.com-sfsheath-italy-3d-amphitheaters_-_2018-01-21_04-52-13/sfsheath-italy-3d-amphitheaters_-_2018-01-21_04-52-13.bundle and run: git clone sfsheath-italy-3d-amphitheaters_-_2018-01-21_04-52-13.bundle Source: https://github.com/sfsheath/italy-3d-amphitheaters Uploader: sfsheath Upload date: 2018-01-21
Topics: GitHub, code, software, git
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16
Feb 14, 2021
02/21
by
benmarwick
software
eye 16
favorite 0
comment 0
R code for converting B&W jpgs of artefact silhouettes to matrices and computing basic Elliptical Fourier statistics, including PCA and MANOVA To restore the repository download the bundle wget https://archive.org/download/gist.github.com-6260541_-_2015-12-21_05-58-59/6260541_-_2015-12-21_05-58-59.bundle and run: git clone 6260541_-_2015-12-21_05-58-59.bundle Source: https://gist.github.com/6260541 Uploader: benmarwick Upload date: 2015-12-21
Topics: Gist, GitHub, code, software, git
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21
Feb 14, 2021
02/21
by
benmarwick
software
eye 21
favorite 0
comment 0
Make a stratigraphic-style plot-schematic of sediment colour using munsell values To restore the repository download the bundle wget https://archive.org/download/gist.github.com-f32cbc2fe7297ec9f276b52c118a249a_-_2019-03-16_00-28-14/f32cbc2fe7297ec9f276b52c118a249a_-_2019-03-16_00-28-14.bundle and run: git clone f32cbc2fe7297ec9f276b52c118a249a_-_2019-03-16_00-28-14.bundle Source: https://gist.github.com/f32cbc2fe7297ec9f276b52c118a249a Uploader: benmarwick Upload date: 2019-03-16
Topics: Gist, GitHub, code, software, git
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Feb 14, 2021
02/21
by
steko
software
eye 15
favorite 0
comment 0
Kotyle is a software program for calculating the capacity of a ceramic vessel, like an amphora. The main use of Kotyle is for artifacts studied by archaeologists. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-kotyle_-_2020-06-23_23-00-02/steko-kotyle_-_2020-06-23_23-00-02.bundle and run: git clone steko-kotyle_-_2020-06-23_23-00-02.bundle Source: https://codeberg.org/steko/kotyle Uploader: steko Upload date: 2020-06-23
Topics: Codeberg, code, software, git
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20
Feb 14, 2021
02/21
by
benmarwick
software
eye 20
favorite 0
comment 0
Experimenting with the opencontext.org API using R To restore the repository download the bundle wget https://archive.org/download/gist.github.com-50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57/50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57.bundle and run: git clone 50aa4c39b7d955d0ec40_-_2016-09-16_22-55-57.bundle Source: https://gist.github.com/50aa4c39b7d955d0ec40 Uploader: benmarwick Upload date: 2016-09-16
Topics: Gist, GitHub, code, software, git
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32
Jul 6, 2021
07/21
by
AProfico
software
eye 32
favorite 0
comment 0
Tools for Geometric Morphometrics. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export format files into another format. Arothron Tools for Geometric Morphometrics. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export...
Topics: GitHub, code, software, git
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Feb 4, 2021
02/21
by
ArchaeoStat
software
eye 16
favorite 0
comment 0
Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies ArchaeoPhases provides functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior...
Topics: GitHub, code, software, git
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Mar 2, 2021
03/21
by
LSIND
software
eye 86
favorite 0
comment 0
known pyramids of Ancient Egypt using python + OpenStreetMap OpenStreetMap of Pyramids of Ancient Egypt Man fears time, but time fears the Pyramids. Probably all of you saw maps of Ancient Egyptian sites (I had school workbook) in stylized way like this below: I wished to recreate this kind of map using Python and OpenStreetMap but the problem I faced was the absolute absence of some dataset or even list with coordinates of egyptian pyramids. So I took different historical sources, Google Maps,...
Topics: GitHub, code, software, git
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Feb 4, 2021
02/21
by
tsdye
software
eye 17
favorite 0
comment 0
Write Graphviz dot files for archaeological sequence diagrams and Bayesian chronological models harris-matrix Write Graphviz dot files for archaeological sequence diagrams and Bayesian chronological models. See the documentation. To restore the repository download the bundle wget https://archive.org/download/github.com-tsdye-harris-matrix_-_2019-08-27_02-15-00/tsdye-harris-matrix_-_2019-08-27_02-15-00.bundle and run: git clone tsdye-harris-matrix_-_2019-08-27_02-15-00.bundle Source:...
Topics: GitHub, code, software, git
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Feb 5, 2021
02/21
by
isaacullah
software
eye 33
favorite 0
comment 0
GIS Projects for teaching and learning about Computational Archaeology GIS-Projects GIS Projects for teaching and learning about Computational Archaeology Software needed: GRASS GIS QGIS GIMP Video Tutorials: These screen-cast video tutorials cover all the steps to complete the projects below. I include updated versions each year, as some of the details of the software tends to change, but the concepts and basic workflow should remain valid regardless of software version. Play list of 2018...
Topics: GitHub, code, software, git
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Jul 6, 2021
07/21
by
cltk
software
eye 41
favorite 0
comment 0
The Classical Language Toolkit To restore the repository download the bundle wget https://archive.org/download/github.com-cltk-cltk_-_2021-07-03_17-12-10/cltk-cltk_-_2021-07-03_17-12-10.bundle and run: git clone cltk-cltk_-_2021-07-03_17-12-10.bundle Source: https://github.com/cltk/cltk Uploader: cltk Upload date: 2021-07-03
Topics: GitHub, code, software, git
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Jul 6, 2021
07/21
by
philriris
software
eye 21
favorite 0
comment 0
A compilation of anthropogenic radiocarbon dates for the Caribbean region caribbean-14C A compilation of 2147 anthropogenic radiocarbon ( 14 C) dates for the Caribbean region from 504 sites across 57 islands. The information in this repository is largely adapted from the paper "Reevaluating human colonization of the Caribbean using chronometric hygiene and Bayesian modeling" by Napolitano et al. in Science Advances (https://doi.org/10.1126/sciadv.aar7806). It also includes a number of...
Topics: GitHub, code, software, git
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Jul 6, 2021
07/21
by
pr0m1th3as
software
eye 35
favorite 0
comment 0
Tools for osteometric sorting of human remains osteometric-sorting Tools for osteometric sorting of human remains To restore the repository download the bundle wget https://archive.org/download/github.com-pr0m1th3as-osteometric-sorting_-_2020-05-09_00-52-46/pr0m1th3as-osteometric-sorting_-_2020-05-09_00-52-46.bundle and run: git clone pr0m1th3as-osteometric-sorting_-_2020-05-09_00-52-46.bundle Source: https://github.com/pr0m1th3as/osteometric-sorting Uploader: pr0m1th3as Upload date: 2020-05-09
Topics: GitHub, code, software, git
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Jul 6, 2021
07/21
by
pr0m1th3as
software
eye 65
favorite 0
comment 0
A GNU Octave function for estimating sex from bones of the lower and upper limbs skeletal-sex-estimation A GNU Octave function for skeletal sex estimation The function estimate_sex provides a graphical user interface for estimating sex from various sleletal elements according to the selected classifier saved in the respective .mat files. The required classifier file can be parsed as an input argument to the function or it can be selected through the open file dialog when the function is called...
Topics: GitHub, code, software, git
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12
Feb 5, 2021
02/21
by
ropensci
software
eye 12
favorite 0
comment 0
A tool for measuring tree-ring width MtreeRing Authors: Jingning Shi , Wei Xiang License: GPL3 MtreeRing is a tool for automatically measuring tree-ring width using image processing techniques. Installation Install the stable version from CRAN rinstall.packages("MtreeRing") or the development version from GitHub ```r install.packages("devtools") devtools::install_github("ropensci/MtreeRing")``` Ring-width measurement 1. Read an image ```rlibrary(MtreeRing) Read and...
Topics: GitHub, code, software, git
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19
Feb 14, 2021
02/21
by
steko
software
eye 19
favorite 0
comment 0
GeoJSON files for ceramic kilns of the ancient world, no chronological/spatial boundaries. An experiment, feel free to submit your pull requests! Ceramic kilns and workshops in the ancient world This repository contains GeoJSON map files about ceramic kilns and workshops ( ateliers ) in the ancient world: Classical antiquity, Eastern civilizations, pre-Columbian Americas, etc.. if it is an archaeological feature, it will be good for this repository. How to contribute You will need a GitHub...
Topics: Codeberg, code, software, git
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10.0
Feb 14, 2021
02/21
by
steko
software
eye 10
favorite 0
comment 0
These scrapers, when ready, will make it possible to aggregate severalexisting databases into one (giant) metadatabase of radiocarbon dates. They're written in Javascript with Node.js and the scraperjs library. You can do cool stuff with many thousand radiocarbon dates: Reconstructing regional population fluctuations in the European Neolithic using radiocarbon dates: a new case-study using an improved method To restore the repository download the bundle wget...
Topics: Codeberg, code, software, git
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Feb 14, 2021
02/21
by
steko
software
eye 18
favorite 0
comment 0
What’s the correlation between the exposure time of your photographs and the time of the day? expotime What's the correlation between the exposure time of your photographs and the time of the day? Good question. With clever use of GExiv2 via Python, it's easy to extract the data from EXIF tags. I used R to plot the data. To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-expotime_-_2020-08-08_08-20-45/steko-expotime_-_2020-08-08_08-20-45.bundle...
Topics: Codeberg, code, software, git
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Jul 6, 2021
07/21
by
cl379
software
eye 42
favorite 0
comment 0
R code for Geostatistics in ethnographic contests Geostat R code for Geostatistics in ethnographic contexts Code for executing and plotting kriging analyses in R. To restore the repository download the bundle wget https://archive.org/download/github.com-cl379-Geostat_-_2014-11-10_16-24-57/cl379-Geostat_-_2014-11-10_16-24-57.bundle and run: git clone cl379-Geostat_-_2014-11-10_16-24-57.bundle Source: https://github.com/cl379/Geostat Uploader: cl379 Upload date: 2014-11-10
Topics: GitHub, code, software, git
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90
Mar 2, 2021
03/21
by
frederic-santos
software
eye 90
favorite 0
comment 0
An R package to facilitate the use of Murail et al.’s (1999) approach of sex estimation in past populations rdss rdss is an R-shiny application for making sex estimation somewhat easier. The global approach follows the philosophy of "diagnose sexuelle secondaire", described by Murail et. al (1999) . Feature requests or bug reports are welcome. Documentation Publication This R package has been extensively described and documented in an article published in the International Journal...
Topics: GitHub, code, software, git
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Jul 6, 2021
07/21
by
masonyoungblood
software
eye 30
favorite 0
comment 0
None TransmissionBias Agent-Based Model of Biased Cultural Transmission This package includes an agent-based model (ABM) of cultural transmission that simulates the three main forms of transmission bias: content bias, frequency bias, and demonstrator bias. While it was designed to simulate the cultural transmission of birdsong, it is theoretically generalizable to any cultural system where individuals learn a repertoire (or a set) of cultural traits. The ABM is based on Lachlan et al. (2018) ,...
Topics: GitHub, code, software, git
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61
Jul 6, 2021
07/21
by
ginolhac
software
eye 61
favorite 0
comment 0
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences mapDamage bioconda installation python3 version 2.2.1 conda install -c bioconda mapdamage2=2.2.1 python3 version 2.2.1 with R and 4 mandatory packages for the Bayesian inference: conda install -c bioconda mapdamage2=2.2.1=pyr40_0 Important From version 2.2.1 the master branch is requiring python3 as python2 is not supported from 2020-01-01. Introduction Complete documentation, instructions, examples, screenshots and...
Topics: GitHub, code, software, git
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18
Feb 14, 2021
02/21
by
benmarwick
software
eye 18
favorite 0
comment 0
Using R with wikipedia for various things To restore the repository download the bundle wget https://archive.org/download/gist.github.com-ac394fd61f481393b0ae_-_2020-06-14_18-15-41/ac394fd61f481393b0ae_-_2020-06-14_18-15-41.bundle and run: git clone ac394fd61f481393b0ae_-_2020-06-14_18-15-41.bundle Source: https://gist.github.com/ac394fd61f481393b0ae Uploader: benmarwick Upload date: 2020-06-14
Topics: Gist, GitHub, code, software, git
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22
Feb 14, 2021
02/21
by
benmarwick
software
eye 22
favorite 0
comment 0
Scientific Computing Environment for archaeology: Installing R, Rstudio and other things on a lightweight Linux in a VirtualBox virtual machine To restore the repository download the bundle wget https://archive.org/download/gist.github.com-11204658_-_2018-05-14_19-32-35/11204658_-_2018-05-14_19-32-35.bundle and run: git clone 11204658_-_2018-05-14_19-32-35.bundle Source: https://gist.github.com/11204658 Uploader: benmarwick Upload date: 2018-05-14
Topics: Gist, GitHub, code, software, git
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16
Feb 14, 2021
02/21
by
steko
software
eye 16
favorite 0
comment 0
Management system for physical storage of archaeological finds (ARCHIVED) To restore the repository download the bundle wget https://archive.org/download/codeberg.org-steko-nervia_-_2020-06-22_07-37-06/steko-nervia_-_2020-06-22_07-37-06.bundle and run: git clone steko-nervia_-_2020-06-22_07-37-06.bundle Source: https://codeberg.org/steko/nervia Uploader: steko Upload date: 2020-06-22
Topics: Codeberg, code, software, git
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